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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61052483_61052833_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61052483 - 61052833
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GTGCACACAACT
Flanking Amino Acid:
LKAMDITGSSDPYVKVSLMC
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
76.5
34.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
73.1
0.52
1
70.6
39.6
Minor 5ss
31.7
-2.1
3
40.7
45.5
Minor BPS
45.7
-0.2
2
65.29
44.1

Associated Gene:

Gene:
SYT10
Ensembl Gene ID:
ENSAPLG00000004558
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004687
61021822 - 61056450
34629