About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61054298_61055424_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61054298 - 61055424
Intron Length:
1127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTATATTAACA
Flanking Amino Acid:
PITHWHPLVELPGRATSFDS
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.8
0.81
0.7
81.4
29.8
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
65.1
0.47
1.6
75.74
34.7

Associated Gene:

Gene:
SYT10
Ensembl Gene ID:
ENSAPLG00000004558
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004687
61021822 - 61056450
34629