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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61223219_61230818_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61223219 - 61230818
Intron Length:
7600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTGTTAAAAT
Flanking Amino Acid:
ARRSRGSLHNGSLYRASSVP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.1
0.88
0.7
85
28.6
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
54.2
0.21
2.2
80.63
41.5

Associated Gene:

Gene:
PKP2
Ensembl Gene ID:
ENSAPLG00000004755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004900
61223005 - 61267779
44775