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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61238935_61241976_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61238935 - 61241976
Intron Length:
3042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
CTCCTCCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TCCTCCTCACAG
Flanking Amino Acid:
CFQKAEARRKVFSLGGIPRL
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
75.1
35.1
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
77.6
0.62
0.7
71.6
26.6
Minor 5ss
34.7
-1.7
3.6
48.3
42.4
Minor BPS
46.8
-0.3
2
52.48
47.8

Associated Gene:

Gene:
PKP2
Ensembl Gene ID:
ENSAPLG00000004755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004900
61223005 - 61267779
44775