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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61242185_61248240_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61242185 - 61248240
Intron Length:
6056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCTTC
5'SS Class:
major
3'SS Sequence:
TTGGATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TCTGATTTTACT
Flanking Amino Acid:
KDVETKKQITGLLWNLSSND
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
66
40.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
73.6
0.53
1
66.6
43.6
Minor 5ss
47.1
-0.3
3.1
67.5
43.9
Minor BPS
50.8
0.11
1.9
72.46
44.6

Associated Gene:

Gene:
PKP2
Ensembl Gene ID:
ENSAPLG00000004755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004900
61223005 - 61267779
44775