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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61248419_61257152_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61248419 - 61257152
Intron Length:
8734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTCTTCTTACCG
Flanking Amino Acid:
DIFYNATGCLRNMSSAGPEG
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
80.5
33.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
72.8
0.51
0.9
67.5
32.4
Minor 5ss
36.6
-1.5
2.9
49.5
46.5
Minor BPS
58.7
0.14
1.8
61.99
46.3

Associated Gene:

Gene:
PKP2
Ensembl Gene ID:
ENSAPLG00000004755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004900
61223005 - 61267779
44775