Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61257271_61258698_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

61257271 - 61258698

Intron Length:

1428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTCTTC

5'SS Class:

weak_major

3'SS Sequence:

TTTTCTATTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

CTTTTTCTATTT

Flanking Amino Acid:

AIADHEPNDKATENCVCILH

Intron Amino Acid Position:

556

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

67.7

38.4

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

86.9

0.83

0.7

86.2

26.5

Minor 5ss

0.54

2.2

76.6

39.1

Minor BPS

49.1

0.01

1.9

71.32

40.7

Associated Gene:

Gene:

PKP2

Ensembl Gene ID:

ENSAPLG00000004755

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004900

61223005 - 61267779

44775