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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61258861_61259737_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61258861 - 61259737
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
TCTGTATGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATGATTCTAACA
Flanking Amino Acid:
FGTRSRKVKEKQQDTPLPEE
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
71.7
0.49
1
70
40.5
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
50.7
0.02
1.7
62.62
37.6

Associated Gene:

Gene:
PKP2
Ensembl Gene ID:
ENSAPLG00000004755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004900
61223005 - 61267779
44775