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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61264029_61266378_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61264029 - 61266378
Intron Length:
2350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTTCTTTCATT
Flanking Amino Acid:
HTDLHNAYKKADFKKTDFIN
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.1
0.45
1
71
33.3
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
67.1
0.62
1.7
82.98
39.3

Associated Gene:

Gene:
PKP2
Ensembl Gene ID:
ENSAPLG00000004755
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004900
61223005 - 61267779
44775