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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61298974_61302614_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
61298974 - 61302614
Intron Length:
3641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
ACCTCTCCACGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCGCGAC
U12 Branch Point Sequence:
GACCTCTCCACG
Flanking Amino Acid:
PALFLHRQDHRAPRSRSSAG
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.1
61.9
39.1
Major BPS
39.7
-0.6
1.2
27.1
32.7
Major PPT
48.1
-0.1
1.7
51.7
37.4
Minor 5ss
37.9
-1.4
3.4
50.3
46.6
Minor BPS
42.4
-0.7
1.9
42.67
42.2

Associated Gene:

Gene:
YARS2
Ensembl Gene ID:
ENSAPLG00000004982
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033838
61298884 - 61306076
7193