Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61301808_61301846_F

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

61301808 - 61301846

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTTTTCTTT

5'SS Class:

weak_minor

3'SS Sequence:

AGGCATGCTGGAG|A

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTTTCTTTAATA

Flanking Amino Acid:

NEATQHSFYADSPAPLLPSA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.05

1.2

56.3

43.1

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

45.2

-0.2

1.7

43.2

42.5

Minor 5ss

56.6

0.22

2.3

66.4

44.7

Minor BPS

1.19

0.8

91.01

22.8

Associated Gene:

Gene:

YARS2

Ensembl Gene ID:

ENSAPLG00000004982

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022899

61301720 - 61307709

5990