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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61303951_61306406_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61303951 - 61306406
Intron Length:
2456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTGCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTTATGTAGACA
Flanking Amino Acid:
FVRQQDDIVEKYLKLFTFLP
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
67
0.38
0.9
60.6
35.4
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
43.4
-0.5
2.3
57.89
42.2

Associated Gene:

Gene:
YARS2
Ensembl Gene ID:
ENSAPLG00000004982
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022899
61301720 - 61307709
5990
ENSAPLT00000020808
61302029 - 61307709
5681
ENSAPLT00000039453
61301027 - 61307709
6683
ENSAPLT00000005133
61298884 - 61307709
8826
ENSAPLT00000031228
61301284 - 61307709
6426
ENSAPLT00000024280
61302029 - 61307709
5681