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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61306563_61306882_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61306563 - 61306882
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGTTT
5'SS Class:
major
3'SS Sequence:
TTTGTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTATTTTGAAT
Flanking Amino Acid:
HGTEGLESAKRCTRALYYSS
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
78
32.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.2
0.79
0.8
80.1
32
Minor 5ss
36.6
-1.5
3.6
55
49.2
Minor BPS
56.3
0.28
1.4
71.92
39.3

Associated Gene:

Gene:
YARS2
Ensembl Gene ID:
ENSAPLG00000004982
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022899
61301720 - 61307709
5990
ENSAPLT00000005133
61298884 - 61307709
8826
ENSAPLT00000039453
61301027 - 61307709
6683
ENSAPLT00000031228
61301284 - 61307709
6426
ENSAPLT00000024280
61302029 - 61307709
5681