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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61307054_61307549_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61307054 - 61307549
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
GTTTTTTTTAAG
Flanking Amino Acid:
KANAIQDGPSGYQKITDGGV
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
76.7
34.9
Major BPS
64.7
0.37
1
73
31.5
Major PPT
81.8
0.72
1
86.9
31.1
Minor 5ss
47.5
-0.2
2.5
57.9
46.7
Minor BPS
50.5
-0.1
1.8
60.53
41.2

Associated Gene:

Gene:
YARS2
Ensembl Gene ID:
ENSAPLG00000004982
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022899
61301720 - 61307709
5990
ENSAPLT00000005133
61298884 - 61307709
8826
ENSAPLT00000039453
61301027 - 61307709
6683
ENSAPLT00000031228
61301284 - 61307709
6426
ENSAPLT00000024280
61302029 - 61307709
5681