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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61314709_61315255_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61314709 - 61315255
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAA
5'SS Class:
major
3'SS Sequence:
ATCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
ATCTGTTTTACA
Flanking Amino Acid:
RRKEAADMLKNSSFFHCFFG
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.5
33.3
Major BPS
67.6
0.44
1.2
75
40
Major PPT
82.4
0.73
0.9
76
37.4
Minor 5ss
38.9
-1.2
2.8
48.9
46.9
Minor BPS
49.8
-0
2.1
64.89
41.7

Associated Gene:

Gene:
DNM1L
Ensembl Gene ID:
ENSAPLG00000005012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005244
61314614 - 61349472
34859