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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61315416_61317526_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61315416 - 61317526
Intron Length:
2111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATGAAGC
Flanking Amino Acid:
FLIVRKNIQDSVPKAVMHFL
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.4
0.75
0.9
77.3
37
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
51.5
0.03
2
68.44
42.8

Associated Gene:

Gene:
DNM1L
Ensembl Gene ID:
ENSAPLG00000005012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027430
61314173 - 61349472
35300
ENSAPLT00000005244
61314614 - 61349472
34859
ENSAPLT00000036207
61314173 - 61349472
35300
ENSAPLT00000029240
61314173 - 61349472
35300