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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61323814_61324762_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61323814 - 61324762
Intron Length:
949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTGC
5'SS Class:
major
3'SS Sequence:
CCTTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
AATTTTTGACCT
Flanking Amino Acid:
RRRLPVTNEMVHNLVAIELA
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
67.8
38.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83
0.74
0.8
77.3
29.8
Minor 5ss
40.8
-1
2.8
50.3
41.2
Minor BPS
52.8
0.17
1.7
71.84
39.1

Associated Gene:

Gene:
DNM1L
Ensembl Gene ID:
ENSAPLG00000005012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029240
61314173 - 61349472
35300
ENSAPLT00000027430
61314173 - 61349472
35300
ENSAPLT00000005244
61314614 - 61349472
34859
ENSAPLT00000036207
61314173 - 61349472
35300