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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61324853_61324948_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61324853 - 61324948
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCATCTGTAATT
Flanking Amino Acid:
IQHCSNYSTQELLRFPKLHD
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
89.1
27.3
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
58.7
0.35
2
75.99
41.5

Associated Gene:

Gene:
DNM1L
Ensembl Gene ID:
ENSAPLG00000005012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036207
61314173 - 61349472
35300
ENSAPLT00000029240
61314173 - 61349472
35300
ENSAPLT00000027430
61314173 - 61349472
35300
ENSAPLT00000005244
61314614 - 61349472
34859