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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61327382_61328000_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61327382 - 61328000
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTCTG
5'SS Class:
major
3'SS Sequence:
CTTTAAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CATCCGTTAACT
Flanking Amino Acid:
VKLGIIGVVNRSQLDINNKK
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
65.3
46
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.8
0.65
0.9
74.9
38.5
Minor 5ss
39.3
-1.2
2.8
50
46.3
Minor BPS
61.2
0.43
2.1
78.69
43.2

Associated Gene:

Gene:
DNM1L
Ensembl Gene ID:
ENSAPLG00000005012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029240
61314173 - 61349472
35300
ENSAPLT00000027430
61314173 - 61349472
35300
ENSAPLT00000005244
61314614 - 61349472
34859
ENSAPLT00000036207
61314173 - 61349472
35300