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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61330197_61331009_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61330197 - 61331009
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATAT
5'SS Class:
major
3'SS Sequence:
GTTTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
ATTTTGAGAAGT
Flanking Amino Acid:
TLVDLPGMTKVPVGDQPKDI
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
77.7
33.3
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
84.6
0.78
0.7
77.9
36.6
Minor 5ss
45.2
-0.5
3
64.8
46.5
Minor BPS
42
-0.5
2.4
67.68
43

Associated Gene:

Gene:
DNM1L
Ensembl Gene ID:
ENSAPLG00000005012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029240
61314173 - 61349472
35300
ENSAPLT00000027430
61314173 - 61349472
35300
ENSAPLT00000005244
61314614 - 61349472
34859
ENSAPLT00000036207
61314173 - 61349472
35300