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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61332880_61334047_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
61332880 - 61334047
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGCCTTT
5'SS Class:
weak_major
3'SS Sequence:
TCTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCTCATGT
Flanking Amino Acid:
TWKNPRHLTKEIDAEEWGKF
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.6
0.16
1.4
61.8
45.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
51.1
0.04
2.9
73.9
42.6
Minor BPS
52.6
0.16
2.1
75.91
46.6

Associated Gene:

Gene:
DNM1L
Ensembl Gene ID:
ENSAPLG00000005012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005244
61314614 - 61349472
34859
ENSAPLT00000036207
61314173 - 61349472
35300
ENSAPLT00000029240
61314173 - 61349472
35300