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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61332880_61339375_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61332880 - 61339375
Intron Length:
6496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCTCATGT
Flanking Amino Acid:
DGRKTAGDENEIDAEEWGKF
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
52.6
0.16
2.1
75.91
46.6

Associated Gene:

Gene:
DNM1L
Ensembl Gene ID:
ENSAPLG00000005012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027430
61314173 - 61349472
35300