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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61334087_61339375_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61334087 - 61339375
Intron Length:
5289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTCTTTAACT
Flanking Amino Acid:
DGRKTAGDENDPATWKNPRH
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
68.7
38.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.9
0.69
0.8
75
33.5
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
87.8
1.26
0.9
95.57
31.2

Associated Gene:

Gene:
DNM1L
Ensembl Gene ID:
ENSAPLG00000005012
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036207
61314173 - 61349472
35300
ENSAPLT00000029240
61314173 - 61349472
35300
ENSAPLT00000005244
61314614 - 61349472
34859