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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61409007_61409090_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61409007 - 61409090
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTGTTCTTAATC
Flanking Amino Acid:
VVLYMYGAPQDVKALATIPL
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
70.6
41.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.3
0.68
0.7
76.8
25.2
Minor 5ss
45.6
-0.5
2.9
64.4
47
Minor BPS
80.2
0.93
1
81.54
33.1

Associated Gene:

Gene:
FGD4
Ensembl Gene ID:
ENSAPLG00000011676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048075
61408749 - 61472192
63444
ENSAPLT00000034165
61408749 - 61503150
94402
ENSAPLT00000027324
61408749 - 61520984
112236
ENSAPLT00000012228
61408749 - 61461992
53244