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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61411438_61411846_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61411438 - 61411846
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
CTACCCCTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTATCC
Flanking Amino Acid:
EYEDTPVEVSNAELGKRAPR
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
66.5
40.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
67.4
0.39
1
65.7
35.7
Minor 5ss
43.5
-0.7
2.8
62.6
42
Minor BPS
62.9
0.39
1.6
69.29
42.7

Associated Gene:

Gene:
FGD4
Ensembl Gene ID:
ENSAPLG00000011676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034165
61408749 - 61503150
94402
ENSAPLT00000027324
61408749 - 61520984
112236
ENSAPLT00000012228
61408749 - 61461992
53244
ENSAPLT00000048075
61408749 - 61472192
63444