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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61411943_61412116_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61411943 - 61412116
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
AGGTTTTCCATT
Flanking Amino Acid:
SEQDKEEWIKALQSTIEAFQ
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
74
0.54
0.8
66.6
40
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
44.3
-0.3
1.8
58.24
39.7

Associated Gene:

Gene:
FGD4
Ensembl Gene ID:
ENSAPLG00000011676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034165
61408749 - 61503150
94402
ENSAPLT00000027324
61408749 - 61520984
112236
ENSAPLT00000012228
61408749 - 61461992
53244
ENSAPLT00000048075
61408749 - 61472192
63444