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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61415125_61416527_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61415125 - 61416527
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
TSAQERHLFLFNNMLLYCVP
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
82.6
29.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
41.2
-1
2.8
53
39
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
FGD4
Ensembl Gene ID:
ENSAPLG00000011676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027324
61408749 - 61520984
112236
ENSAPLT00000012228
61408749 - 61461992
53244
ENSAPLT00000048075
61408749 - 61472192
63444
ENSAPLT00000034165
61408749 - 61503150
94402