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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61419442_61424627_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61419442 - 61424627
Intron Length:
5186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACTTTACA
Flanking Amino Acid:
LPELEKRMQEWTHTPRIGDI
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.6
38.4
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86.1
0.81
0.8
80
31.8
Minor 5ss
32.3
-2
3.5
44.3
45.4
Minor BPS
64.8
0.46
1.8
76.53
40.2

Associated Gene:

Gene:
FGD4
Ensembl Gene ID:
ENSAPLG00000011676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034165
61408749 - 61503150
94402
ENSAPLT00000027324
61408749 - 61520984
112236
ENSAPLT00000012228
61408749 - 61461992
53244
ENSAPLT00000048075
61408749 - 61472192
63444