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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61426606_61435716_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61426606 - 61435716
Intron Length:
9111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTTTCTGCAGTA
Flanking Amino Acid:
SKQDQPTETKETDEQKRHKI
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
82.8
0.74
0.7
81.1
24
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
46.2
-0.2
2.3
67.09
40.2

Associated Gene:

Gene:
FGD4
Ensembl Gene ID:
ENSAPLG00000011676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012228
61408749 - 61461992
53244
ENSAPLT00000048075
61408749 - 61472192
63444
ENSAPLT00000034165
61408749 - 61503150
94402
ENSAPLT00000027324
61408749 - 61520984
112236