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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61439025_61446773_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61439025 - 61446773
Intron Length:
7749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAT
U12 Branch Point Sequence:
ATCACCATTACT
Flanking Amino Acid:
PRSASNPKPQVPPKPIHLQK
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
84.2
33.9
Major BPS
70.8
0.52
1.2
63.4
44.3
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
36.8
-1.5
2.9
51.6
44.9
Minor BPS
50.7
0.1
2
72.56
43.6

Associated Gene:

Gene:
FGD4
Ensembl Gene ID:
ENSAPLG00000011676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012228
61408749 - 61461992
53244
ENSAPLT00000048075
61408749 - 61472192
63444
ENSAPLT00000034165
61408749 - 61503150
94402
ENSAPLT00000027324
61408749 - 61520984
112236