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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61446939_61503128_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61446939 - 61503128
Intron Length:
56190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAACG
Flanking Amino Acid:
MLLDIFNGSSICPKSLI
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
70.2
0.5
1.4
75.64
36.2

Associated Gene:

Gene:
FGD4
Ensembl Gene ID:
ENSAPLG00000011676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034165
61408749 - 61503150
94402