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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61446939_61519947_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61446939 - 61519947
Intron Length:
73009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAACG
Flanking Amino Acid:
WGEAARGPPAGSSICPKSLI
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
70.2
0.5
1.4
75.64
36.2

Associated Gene:

Gene:
FGD4
Ensembl Gene ID:
ENSAPLG00000011676
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027324
61408749 - 61520984
112236