Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61520094_61520325_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

61520094 - 61520325

Intron Length:

232

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCGCGG

5'SS Class:

major

3'SS Sequence:

CCCCCGCCCCGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CTCTCTGTGTCT

Flanking Amino Acid:

GRAWGRRLPGRMNRAEGINF

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.5

0.3

1.3

46.3

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

46.6

-0.2

1.6

45.3

30.9

Minor 5ss

34.6

-1.7

3.5

47.8

47.7

Minor BPS

37.7

-0.8

3.7

65.84

45.8

Associated Gene:

Gene:

FGD4

Ensembl Gene ID:

ENSAPLG00000011676

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027324

61408749 - 61520984

112236