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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61542347_61557214_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61542347 - 61557214
Intron Length:
14868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CAGTTTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATATGTCTAATT
Flanking Amino Acid:
LGKSKIGSPKIVSSLLPPYR
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
75.1
0.57
0.9
69.8
36.3
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
49.5
0.04
2
71.68
39.6

Associated Gene:

Gene:
BICD1
Ensembl Gene ID:
ENSAPLG00000011941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012439
61542271 - 61683218
140948