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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61557423_61564492_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61557423 - 61564492
Intron Length:
7070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCAGAT
U12 Branch Point Sequence:
TTTCCCAGATTT
Flanking Amino Acid:
FSSLRAMFATRCDEYVTQLD
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.2
Major BPS
49.7
-0
1.1
46.3
37.5
Major PPT
87.2
0.84
0.8
80.5
37
Minor 5ss
28.6
-2.5
3.5
38
46.8
Minor BPS
48.9
-0
2
75.75
40.6

Associated Gene:

Gene:
BICD1
Ensembl Gene ID:
ENSAPLG00000011941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012439
61542271 - 61683218
140948