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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61564645_61569507_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61564645 - 61569507
Intron Length:
4863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATATCCTTATCT
Flanking Amino Acid:
LRAVLKANKQTAEVALANLK
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
83.2
0.75
0.9
80.2
37.3
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
75.3
0.87
1.5
87.67
37.3

Associated Gene:

Gene:
BICD1
Ensembl Gene ID:
ENSAPLG00000011941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012439
61542271 - 61683218
140948