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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61570603_61576500_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61570603 - 61576500
Intron Length:
5898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GACTCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CTAACTTTGACT
Flanking Amino Acid:
IQKLKQQLMQVEREKAILLA
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
72.1
0.5
1
65
40.9
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
66.5
0.6
1.3
76.4
40.4

Associated Gene:

Gene:
BICD1
Ensembl Gene ID:
ENSAPLG00000011941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012439
61542271 - 61683218
140948