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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61576939_61580391_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61576939 - 61580391
Intron Length:
3453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TCTTGTCTAATT
Flanking Amino Acid:
KLVSTLKQNQVEYEGLKHEI
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
78.2
36.3
Major BPS
75.5
0.63
1
66
40.9
Major PPT
76.9
0.6
1
75
38.8
Minor 5ss
43.7
-0.7
2.9
59.5
38.8
Minor BPS
52.9
0.17
2.1
75.83
41.7

Associated Gene:

Gene:
BICD1
Ensembl Gene ID:
ENSAPLG00000011941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012439
61542271 - 61683218
140948