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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61580545_61611540_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61580545 - 61611540
Intron Length:
30996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACAAAT
U12 Branch Point Sequence:
TTTTCTCTCACC
Flanking Amino Acid:
LTAVVQDLKENNEMVELQRI
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
57.1
0.18
1
62.9
30.6
Major PPT
80.7
0.69
0.8
74.8
34.8
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
59.8
0.29
2.1
78.9
36.8

Associated Gene:

Gene:
BICD1
Ensembl Gene ID:
ENSAPLG00000011941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012439
61542271 - 61683218
140948