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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61611754_61683191_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61611754 - 61683191
Intron Length:
71438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
AGTAGTTTAATA
Flanking Amino Acid:
MMLGFAHRGAFGQSFSIHR
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
81
0.7
0.7
76.3
25.7
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
53.1
0.09
1.8
62.98
37.6

Associated Gene:

Gene:
BICD1
Ensembl Gene ID:
ENSAPLG00000011941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012439
61542271 - 61683218
140948