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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61726239_61748989_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61726239 - 61748989
Intron Length:
22751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAACTGC
5'SS Class:
major
3'SS Sequence:
TTCTGTGTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATATTTATAT
Flanking Amino Acid:
KQKKMEGISTVKLCLEAEFP
Intron Amino Acid Position:
1849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
62.5
39
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.8
0.51
1
65.9
44.2
Minor 5ss
38.1
-1.3
3.1
50.2
46.4
Minor BPS
53.2
0.18
1.9
75.23
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006568
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036173
61725661 - 61755476
29816