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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6184157_6186751_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6184157 - 6186751
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAAG
5'SS Class:
major
3'SS Sequence:
TTGTTTATCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTGTTTATCC
Flanking Amino Acid:
LKEREEGAEMEGGVAPEKEA
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73
37.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81
0.7
0.9
74
40.4
Minor 5ss
34.6
-1.8
2.8
38.6
40.9
Minor BPS
61.3
0.33
2
77.75
38.7

Associated Gene:

Gene:
OPTN
Ensembl Gene ID:
ENSAPLG00000004645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004847
6181997 - 6198603
16607