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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61854096_61855240_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61854096 - 61855240
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTGAATGAATA
Flanking Amino Acid:
FLFHGCPLITDRSRDVLEQL
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
70.2
37.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
26.7
-2.7
2.9
31.1
43
Minor BPS
45.6
-0.3
1.9
58.28
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006574
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006836
61853993 - 61855314
1322