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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61860304_61862189_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
61860304 - 61862189
Intron Length:
1886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTAAATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCCTTTTAAAT
Flanking Amino Acid:
IYWPGGQALSRYILDNPRVV
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
42.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76
0.58
1
67.7
41.8
Minor 5ss
45.8
-0.4
2.6
60.7
44
Minor BPS
65.1
0.55
1.4
77.95
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006601
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036050
61859105 - 61862523
3419
ENSAPLT00000006840
61859105 - 61862506
3402