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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6186908_6187664_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6186908 - 6187664
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
AAGCTAATAAGT
Flanking Amino Acid:
EDSFVEIGMNEGEINRAAKE
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.4
36.1
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
88.2
0.86
0.6
88.7
20.6
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
41.3
-0.5
2
55.06
40.2

Associated Gene:

Gene:
OPTN
Ensembl Gene ID:
ENSAPLG00000004645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004847
6181997 - 6198603
16607