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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6187742_6189870_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6187742 - 6189870
Intron Length:
2129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTAGA
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TGTTACTTACCT
Flanking Amino Acid:
GEVPSNIAVYIKGKYADESK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
72.7
38.2
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
82
0.72
0.8
77.2
37.1
Minor 5ss
43.6
-0.7
2.6
55
42.6
Minor BPS
67.4
0.63
1.8
86
39.7

Associated Gene:

Gene:
OPTN
Ensembl Gene ID:
ENSAPLG00000004645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004847
6181997 - 6198603
16607