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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6191224_6193886_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6191224 - 6193886
Intron Length:
2663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TATTCTCTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTCTCTAAAA
Flanking Amino Acid:
TDQEEESSEAVGSEVEALNT
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
78.6
35.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67
0.38
1.1
68.8
35.9
Minor 5ss
43.2
-0.7
2.9
64.8
39.3
Minor BPS
62
0.37
1.7
74.88
35.9

Associated Gene:

Gene:
OPTN
Ensembl Gene ID:
ENSAPLG00000004645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004847
6181997 - 6198603
16607