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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61926550_61931342_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61926550 - 61931342
Intron Length:
4793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
ATAACCTTATCT
Flanking Amino Acid:
NPFDQDAVNMLCMPKGLSFR
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.9
35.2
Major BPS
70
0.5
1
59.6
38.6
Major PPT
84.7
0.78
0.7
83.9
24.2
Minor 5ss
33.8
-1.8
3
38.1
42.1
Minor BPS
66.6
0.6
1.6
80.56
40.6

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891