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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_61932010_61943591_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
61932010 - 61943591
Intron Length:
11582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCACT
5'SS Class:
major
3'SS Sequence:
TCTCCCCATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
GATAATTCAATG
Flanking Amino Acid:
LEMQILLYSQDYQRLMTVAE
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
71.4
40.3
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
71.7
0.49
0.8
66.6
28.6
Minor 5ss
35.2
-1.7
3.2
49
47
Minor BPS
45.3
-0.4
1.7
47.65
39.3

Associated Gene:

Gene:
DENND5B
Ensembl Gene ID:
ENSAPLG00000006605
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006931
61925905 - 61979795
53891