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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_6194003_6194680_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6194003 - 6194680
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGATCAA
U12 Branch Point Sequence:
TTTTCTTTTTCT
Flanking Amino Acid:
AELIQKKLQEKCQVLEIMNS
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
76.7
33.2
Major BPS
48.4
-0.1
1.3
51.7
43.9
Major PPT
74.5
0.55
1
73.5
41.8
Minor 5ss
43
-0.8
3.3
59.1
40
Minor BPS
48.1
-0
3.6
87.77
37.8

Associated Gene:

Gene:
OPTN
Ensembl Gene ID:
ENSAPLG00000004645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004847
6181997 - 6198603
16607